Youhuang Bai's Lab
Bioinformatics in RNA biology and (epi)genomics
Publicaitons
(# Cofirst author)
2020
Zhuo Zhu#, Mingkun Yang#, Youhuang Bai#, Feng Ge, Shihua Wang. Antioxidant Related Catalase CTA1 Regulates Development, Aflatoxin Biosynthesis and Virulence in Pathogenic Fungus Aspergillus flavus. Environmental Microbiology. 2020
2019
Youhuang Bai#, Xiaozhuan Dai#, Tiantian Ye, Peijing Zhang, Xu Yan, Xiaonan Gong, Siliang Liang, Ming Chen. PlncRNADB: A Repository of Plant lncRNAs and lncRNA-RBP Protein Interactions. Current Bioinformatics. 2019
Youhuang Bai#, Xiaozhuan Dai#, Yi Li, Lulu Wang, Weimin Li, Yanhui Liu, Yan Cheng, Yuan Qin. Identification and characterization of pineapple leaf lncRNAs in crassulacean acid metabolism (CAM) photosynthesis pathway. Scientific reports,2019
2017
Bai Y#, B Chen#, M Li#, Y Zhou, S Ren, Q Xu, M Chen*, and S Wang*. (2017) FPD: A comprehensive phosphorylation database in fungi. Fungal Biol.
Wang B#, X Han#, Y Bai#, Z Lin, M Qiu, X Nie, S Wang, F Zhang, Z Zhuang, J Yuan, and S Wang*. (2017) Effects of nitrogen metabolism on growth and aflatoxin biosynthesis in Aspergillus flavus. J. Hazard. Mater. doi: http://dx.doi.org/10.1016/j.jhazmat.2016.11.043
2016
Bai Y#, X Dai#, A Harrison, C Johnston, and M Chen* (2016) Toward a next-generation atlas of RNA secondary structure. Brief. Bioinform. 17:63-77.
2015
Shen C#*, R Yue#, Y Bai#, R Feng, T Sun, X Wang, Y Yang, S Tie, and H Wang* (2015) Identification and analysis of Medicago truncatula auxin transporter gene families uncover their roles in responses to Sinorhizobium meliloti infection. Plant Cell Physiol. 56:1930-1943.
Bai Y#, S Wang#, H Zhong#, Q Yang, F Zhang, Z Zhuang, J Yuan, X Nie, and S Wang* (2015) Integrative analyses reveal transcriptome-proteome correlation in biological pathways and secondary metabolism clusters in A. flavus in response to temperature. Sci. Rep. 5:14582-14582.
Bai Y#, F Lan#, W Yang#, F Zhang, K Yang, Z Li, P Gao, and S Wang* (2015) sRNA profiling in Aspergillus flavus reveals differentially expressed miRNA-like RNAs response to water activity and temperature. Fungal Genet. Biol. 81:113-9.
Bai Y, X Dai, AP Harrison, M Chen* (2015) RNA regulatory networks in animals and plants: a long noncoding RNA perspective. Brief. Funct. Genomics 14:91-101.
2013 before
Zhang Y#, Y Bai#, J Han, M Chen, E Kayesh, W Jiang, and J Fang* (2013) Bioinformatics prediction of miRNAs in the Prunus persica genome with validation of their precise sequences by miR-RACE. J Plant Physiol. 170:80-92.
Bai Y, Y Meng, D Huang, Y Qi, and M Chen* (2011) Origin and evolutionary analysis of the plant-specific TIFY transcription factor family. Genomics 98:128-136 （Cover article）
S Wang#, Y Bai#, C Shen, Y Wu, S Zhang, D Jiang, T Guilfoyle, M Chen*, and Y Qi* (2010) Auxin-related gene families in abiotic stress response in Sorghum bicolor. Funct. Integr. Genomics 10:533-546.